Index

A

AdaptivePersistenceResult (class in morseframes) add_simplex() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) algorithm (morseframes.MorseSequence attribute) annotation_as_simplices() (in module morseframes)

as_simplices() (morseframes.FilteredComplex method) (morseframes.MorseComplex method) (morseframes.MorseSequence method) assert_matches_gudhi() (in module morseframes) assert_matches_standard() (in module morseframes)

B

barcodes_materialized (morseframes.PersistenceBenchmark attribute) benchmark_coreduction_directions() (in module morseframes) benchmark_persistence() (in module morseframes) benchmark_same_level_reduction_directions() (in module morseframes) benchmark_sequence_algorithms() (in module morseframes) birth (morseframes.EssentialInterval attribute) (morseframes.EssentialIntervalSimplices attribute) (morseframes.PersistencePair attribute) (morseframes.PersistencePairSimplices attribute) birth_value (morseframes.EssentialInterval attribute) (morseframes.EssentialIntervalSimplices attribute) (morseframes.PersistencePair attribute) (morseframes.PersistencePairSimplices attribute)

boundaries (morseframes.MorseComplex attribute) boundaries_as_simplices() (morseframes.MorseComplex method) boundary (morseframes.SimplexRecord attribute) boundary() (morseframes.FilteredComplex method) (morseframes.MorseComplex method) boundary_annotation_work (morseframes.MorseReferenceProfile property) boundary_as_simplices() (morseframes.MorseComplex method) boundary_simplices() (morseframes.FilteredComplex method)

C

candidate_benchmarks (morseframes.AdaptivePersistenceResult attribute) candidate_profiles (morseframes.AdaptivePersistenceResult attribute) clear() (morseframes.SimplexTreeBuilder method) coboundary (morseframes.SimplexRecord attribute) coboundary() (morseframes.FilteredComplex method) coboundary_simplices() (morseframes.FilteredComplex method) compute_coreference_complex() (in module morseframes) compute_coreference_map() (in module morseframes) compute_coreference_map_modp() (in module morseframes) compute_morse_complex() (in module morseframes) compute_morse_coreference_persistence() (in module morseframes) compute_morse_coreference_persistence_modp() (in module morseframes) compute_morse_persistence() (in module morseframes) compute_morse_persistence_modp() (in module morseframes) compute_morse_sequence() (in module morseframes) compute_morse_sequence_and_coreference_map() (in module morseframes) compute_morse_sequence_and_reference_map() (in module morseframes) compute_persistence_adaptive() (in module morseframes) compute_persistence_portfolio() (in module morseframes) compute_persistence_profile_portfolio() (in module morseframes) compute_reference_complex() (in module morseframes) compute_reference_map() (in module morseframes) compute_reference_map_modp() (in module morseframes) compute_standard_persistence() (in module morseframes) compute_standard_persistence_modp() (in module morseframes) contains() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) CoreductionDirectionBenchmark (class in morseframes) coreference_complex() (morseframes.MorseCoreferenceFrame method) coreference_map_as_simplices() (in module morseframes) coreferences (morseframes.MorseCoreferenceFrame property) coreferences_as_simplices() (morseframes.MorseCoreferenceFrame method) cpp_backend_active() (in module morseframes) (morseframes.FilteredComplex method) (morseframes.MorseSequence method)

cpp_backend_available() (in module morseframes) cpp_compute_coreference_map() (in module morseframes) cpp_compute_coreference_map_modp() (in module morseframes) cpp_compute_coreference_map_object() (in module morseframes) cpp_compute_morse_coreference_persistence() (in module morseframes) cpp_compute_morse_coreference_persistence_modp() (in module morseframes) cpp_compute_morse_persistence() (in module morseframes) cpp_compute_morse_persistence_modp() (in module morseframes) cpp_compute_morse_sequence() (in module morseframes) cpp_compute_morse_sequence_and_coreference_map_object() (in module morseframes) cpp_compute_morse_sequence_and_reference_map_object() (in module morseframes) cpp_compute_reference_map() (in module morseframes) cpp_compute_reference_map_modp() (in module morseframes) cpp_compute_reference_map_object() (in module morseframes) cpp_compute_standard_persistence() (in module morseframes) cpp_compute_standard_persistence_modp() (in module morseframes) cpp_coreference_map_active() (morseframes.MorseCoreferenceFrame method) cpp_filtered_complex_from_simplices() (in module morseframes) cpp_profile_morse_reference_frame() (in module morseframes) cpp_reduce_morse_coreference_persistence() (in module morseframes) cpp_reduce_morse_persistence() (in module morseframes) cpp_reduce_morse_persistence_with_metrics() (in module morseframes) cpp_reference_map_active() (morseframes.MorseReferenceFrame method) cpp_reference_map_to_tuple() (in module morseframes) critical_index() (morseframes.MorseSequence method) critical_index_of_simplex (morseframes.MorseSequence attribute) critical_ratio (morseframes.AdaptivePersistenceResult attribute) (morseframes.CoreductionDirectionBenchmark property) (morseframes.MorseReferenceProfile property) critical_simplices (morseframes.MorseComplex attribute) (morseframes.MorseSequence attribute) critical_simplices_as_simplices() (morseframes.MorseSequence method)

D

death (morseframes.PersistencePair attribute) (morseframes.PersistencePairSimplices attribute) death_value (morseframes.PersistencePair attribute) (morseframes.PersistencePairSimplices attribute) diagram (morseframes.AdaptivePersistenceResult attribute) dimension (morseframes.EssentialInterval attribute) (morseframes.EssentialIntervalSimplices attribute) (morseframes.PersistencePair attribute) (morseframes.PersistencePairSimplices attribute) (morseframes.SimplexRecord attribute)

dimension() (morseframes.FilteredComplex method) direction (morseframes.CoreductionDirectionBenchmark attribute)

E

essential (morseframes.PersistenceDiagram attribute) essential_as_simplices() (morseframes.PersistenceDiagram method) essential_barcode (morseframes.PersistenceBenchmark attribute) essential_barcode() (morseframes.AdaptivePersistenceResult method) (morseframes.PersistenceDiagram method)

essential_interval_count (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) EssentialInterval (class in morseframes) EssentialIntervalSimplices (class in morseframes) estimated_reducer_work (morseframes.MorseReferenceProfile attribute)

F

fallback_reason (morseframes.AdaptivePersistenceResult attribute) FilteredComplex (class in morseframes) FilteredComplexBuilder (in module morseframes) filtration (morseframes.SimplexRecord attribute) filtration() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) filtration_list() (morseframes.FilteredComplex method) filtration_of() (morseframes.FilteredComplex method) filtration_order (morseframes.FilteredComplex property) finalize() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) find_simplex() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) finite_barcode (morseframes.PersistenceBenchmark attribute) finite_barcode() (morseframes.AdaptivePersistenceResult method) (morseframes.PersistenceDiagram method)

finite_interval_count (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) finite_pairs (morseframes.PersistenceDiagram attribute) finite_pairs_as_simplices() (morseframes.PersistenceDiagram method) frame_mode (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) frame_seconds (morseframes.CoreductionDirectionBenchmark attribute) from_facets() (morseframes.FilteredComplex class method) (morseframes.SimplexTreeBuilder class method) from_graph() (morseframes.FilteredComplex class method) from_gudhi_simplex_tree() (morseframes.FilteredComplex class method) from_lower_star() (morseframes.FilteredComplex class method) (morseframes.SimplexTreeBuilder class method) from_rips_distance_matrix() (morseframes.FilteredComplex class method) from_simplices() (morseframes.FilteredComplex class method)

G

get_filtration() (morseframes.SimplexTreeBuilder method)

gudhi_barcode() (in module morseframes)

I

id (morseframes.SimplexRecord attribute) insert() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) insert_facet() (morseframes.SimplexTreeBuilder method)

insert_lower_star_facet() (morseframes.SimplexTreeBuilder method) insert_simplex() (morseframes.SimplexTreeBuilder method) insert_simplex_only() (morseframes.SimplexTreeBuilder method) intervals_as_simplices() (morseframes.PersistenceDiagram method) is_critical() (morseframes.MorseSequence method)

L

level (morseframes.MorseStep attribute) (morseframes.MorseStepSimplices attribute) (morseframes.SimplexRecord attribute)

level() (morseframes.FilteredComplex method) level_values (morseframes.FilteredComplex property)

M

max_critical_ratio (morseframes.AdaptivePersistenceResult attribute) max_dimension (morseframes.SimplexTreeBuilder property) method (morseframes.AdaptivePersistenceResult attribute) metrics (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) module morseframes morse_reduction_seconds (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) morse_seconds (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute)

morse_sequence_as_simplices() (in module morseframes) MorseComplex (class in morseframes) MorseCoreferenceFrame (class in morseframes) morseframes module MorseReferenceFrame (class in morseframes) MorseReferenceProfile (class in morseframes) MorseSequence (class in morseframes) MorseStep (class in morseframes) MorseStepSimplices (class in morseframes)

N

num_critical_simplices (morseframes.AdaptivePersistenceResult attribute) (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) num_levels (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.FilteredComplex property) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute)

num_regular_pairs (morseframes.MorseReferenceProfile attribute) num_simplices (morseframes.AdaptivePersistenceResult attribute) (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) num_simplices() (morseframes.SimplexTreeBuilder method) num_vertices() (morseframes.SimplexTreeBuilder method)

P

paired_with (morseframes.MorseSequence attribute) paired_with_as_simplices() (morseframes.MorseSequence method) pairs_as_simplices() (morseframes.MorseSequence method) persistence_seconds (morseframes.AdaptivePersistenceResult attribute) PersistenceBenchmark (class in morseframes)

PersistenceDiagram (class in morseframes) PersistencePair (class in morseframes) PersistencePairSimplices (class in morseframes) profile_morse_reference_frame() (in module morseframes) profile_morse_sequence_algorithms() (in module morseframes) profile_seconds (morseframes.MorseReferenceProfile attribute)

R

reducer_boundary_annotation_candidate_criticals (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_max_output_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_max_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_total_input_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_total_output_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_xors (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_zero_skipped_criticals (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_annotation_zero_skipped_faces (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_boundary_plan_face_scans (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_compute_seconds (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reducer_initial_inverse_list_entries (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_initial_max_annotation_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_initial_nonempty_annotations (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_initial_total_annotation_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_inverse_list_appends (morseframes.PersistenceBenchmark attribute) reducer_pivot_eliminations (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reducer_remove_applied (morseframes.PersistenceBenchmark attribute) reducer_remove_candidate_scans (morseframes.PersistenceBenchmark attribute) reducer_remove_max_annotation_size (morseframes.PersistenceBenchmark attribute)

reducer_remove_total_annotation_size (morseframes.PersistenceBenchmark attribute) reducer_setup_seconds (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reducer_working_set_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reducer_xor_applied (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reducer_xor_candidate_scans (morseframes.PersistenceBenchmark attribute) reducer_xor_changed_labels (morseframes.PersistenceBenchmark attribute) reducer_xor_inserted_labels (morseframes.PersistenceBenchmark attribute) reducer_xor_max_input_size (morseframes.PersistenceBenchmark attribute) reducer_xor_max_output_size (morseframes.PersistenceBenchmark attribute) reducer_xor_removed_labels (morseframes.PersistenceBenchmark attribute) reducer_xor_total_input_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reducer_xor_total_output_size (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) reference_complex() (morseframes.MorseReferenceFrame method) reference_final_live_nonempty_annotations (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_final_live_total_annotation_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_map_as_simplices() (in module morseframes) reference_peak_live_nonempty_annotations (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_peak_live_total_annotation_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_released_annotations (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_released_total_annotation_size (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) reference_seconds (morseframes.PersistenceBenchmark attribute) references (morseframes.MorseReferenceFrame property) references_as_simplices() (morseframes.MorseReferenceFrame method) repeats (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) require_simplex_id() (morseframes.FilteredComplex method)

S

SameLevelReductionDirectionBenchmark (in module morseframes) select_morse_sequence_algorithm() (in module morseframes) select_morse_sequence_profile() (in module morseframes) selection_metric (morseframes.AdaptivePersistenceResult attribute) selection_mode (morseframes.AdaptivePersistenceResult attribute) sequence (morseframes.AdaptivePersistenceResult attribute) (morseframes.MorseCoreferenceFrame attribute) (morseframes.MorseReferenceFrame attribute) sequence_algorithm (morseframes.MorseReferenceProfile attribute) (morseframes.PersistenceBenchmark attribute) sequence_seconds (morseframes.AdaptivePersistenceResult attribute) (morseframes.PersistenceBenchmark attribute) sigma (morseframes.MorseStep attribute) (morseframes.MorseStepSimplices attribute) simplex() (morseframes.FilteredComplex method) simplex_filtration() (morseframes.SimplexTreeBuilder method)

simplex_id() (morseframes.FilteredComplex method) simplex_list() (morseframes.FilteredComplex method) simplex_records() (morseframes.FilteredComplex method) simplex_to_critical (morseframes.MorseComplex attribute) SimplexRecord (class in morseframes) SimplexTreeBuilder (class in morseframes) simplices() (morseframes.FilteredComplex method) (morseframes.SimplexTreeBuilder method) simplices_of_level() (morseframes.FilteredComplex method) size (morseframes.FilteredComplex property) (morseframes.SimplexTreeBuilder property) speedup (morseframes.CoreductionDirectionBenchmark property) (morseframes.PersistenceBenchmark property) standard_seconds (morseframes.CoreductionDirectionBenchmark attribute) (morseframes.PersistenceBenchmark attribute) steps (morseframes.MorseSequence attribute) steps_as_simplices() (morseframes.MorseSequence method)

T

tau (morseframes.MorseStep attribute) (morseframes.MorseStepSimplices attribute) to_cpp() (morseframes.FilteredComplex method) to_filtered_complex() (morseframes.SimplexTreeBuilder method)

to_gudhi_simplex_tree() (morseframes.SimplexTreeBuilder method) total_seconds (morseframes.AdaptivePersistenceResult attribute) type (morseframes.MorseStep attribute) (morseframes.MorseStepSimplices attribute)

V

validation_mode (morseframes.PersistenceBenchmark attribute)

vertices (morseframes.SimplexRecord attribute) vertices() (morseframes.FilteredComplex method)